Biblio

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2012
Sucan, IA, Kavraki LE.  2012.  Accounting for Uncertainty in Simultaneous Task and Motion Planning Using Task Motion Multigraphs. IEEE International Conference on Robotics and Automation.
Abstract     
Shehu, A, Kavraki LE.  2012.  Modeling Structures and Motions of Loops in Protein Molecules. Entropy. 14(2):252-290.
Abstract      Preprint PDF     Publisher's web site     
Gipson, B, Hsu D, Kavraki LE, Latombe J-C.  2012.  Computational Models of Proteins Kinematics and Dynamics: Beyond Simulation. 5
Abstract      Preprint PDF     Publisher's web site     
Bekris, KE, Grady DK, Moll M, Kavraki LE.  2012.  Safe Distributed Motion Coordination for Second-Order Systems With Different Planning Cycles. International Journal of Robotics Research. 31:129-150.
Abstract      Preprint PDF     Publisher's web site     
Shehu, A, Kavraki LE.  2012.  Modeling Structures and Motions of Loops in Protein Molecules. Entropy. 14:252-290.
Abstract           Publisher's web site     
Sucan, IA, Kavraki LE.  2012.  A Sampling-Based Tree Planner for Systems With Complex Dynamics. IEEE Transactions on Robotics. 28:116-131.
Abstract      Preprint PDF     Publisher's web site     
2011
Bhatia, A, Maly MR, Kavraki LE, Vardi MY.  2011.  Motion Planning with Complex Goals. Robotics Automation Magazine, IEEE. 18:55-64.
Abstract      Preprint PDF     Publisher's web site     
Gipson, B, Masiel D, Browning N, Spence J, Mitsuoka K, Stahlberg H.  2011.  Automatic recovery of missing amplitudes and phases in tilt-limited electron crystallography of two-dimensional crystals. Physical Review E. 84(1)
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Grady, DK, Moll M, Hegde C, Sankaranarayanan AC, Baraniuk RG, Kavraki LE.  2011.  Look Before You Leap: Predictive Sensing and Opportunistic Navigation. Workshop on Progress and Open Problems in Motion Planning at the IEEE/RSJ Conf. on Intelligent Robots and Systems.
Abstract      Preprint PDF
Moll, M, Bryant DH, Kavraki LE.  2011.  The LabelHash Server and Tools for Substructure-Based Functional Annotation. Bioinformatics. 27:2161--2162.
Abstract      Preprint PDF     Publisher's web site     
Dhanik, A, McMurray JS, Kavraki LE.  2011.  On modeling peptidomimetics in complex with the SH2 domain of Stat3. 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC ’11). :3329-3332.
Abstract      Preprint PDF
Heath, AP, Bennett GN, Kavraki LE.  2011.  An Algorithm for Efficient Identification of Branched Metabolic Pathways. Journal of Computational Biology. [Epub ahead of print]
Abstract           Publisher's web site     
Grady, DK, Bekris KE, Kavraki LE.  2011.  Asynchronous Distributed Motion Planning with Safety Guarantees under Second-Order Dynamics. Algorithmic Foundations of Robotics IX. 68:53-70.
Abstract      Preprint PDF     Publisher's web site     
Heath, AP, Bennett GN, Kavraki LE.  2011.  Identifying Branched Metabolic Pathways by Merging Linear Metabolic Pathways. 15th Annual International Conference on Research in Computational Molecular Biology (RECOMB). 6577/2011:70-84.
Abstract           Publisher's web site     
Sucan, IA, Kavraki LE.  2011.  Mobile Manipulation: Encoding Motion Planning Options Using Task Motion Multigraphs. IEEE International Conference on Robotics and Automation. :5492--5498.
Preprint PDF     Publisher's web site     
Sucan, IA, Kavraki LE.  2011.  On the Advantages of Using Task Motion Multigraphs for Efficient Mobile Manipulation. IEEE/RSJ International Conference on Intelligent Robots and Systems. :4621-4626.
Preprint PDF     Publisher's web site     
Şucan, IA.  2011.  Task and Motion Planning for Mobile Manipulators.
Abstract      Preprint PDF
Moll, M, Sucan IA, Bordeaux J, Kavraki LE.  2011.  Teaching Motion Planning Concepts to Undergraduate Students. IEEE Workshop on Advanced Robotics and its Social Impacts.
Abstract      Preprint PDF
Grady, DK.  2011.  Unsynchronized Distributed Motion Planning with Safety Guarantees under Second-Order Dynamics.
Abstract      Preprint PDF
2010
Bhatia, A, Kavraki LE, Vardi MY.  2010.  Sampling-Based Motion Planning with Temporal Goals. IEEE International Conference on Robotics and Automation. :2689-2696.
Abstract      Preprint PDF
Stamati, H, Clementi C, Kavraki LE.  2010.  Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. Proteins. 78:223-235.
Abstract           Publisher's web site     
Moll, M, Bryant DH, Kavraki LE.  2010.  The LabelHash Algorithm for Substructure Matching. BMC Bioinformatics. 11(1):555.
Abstract      Preprint PDF     Publisher's web site     
Plaku, E, Kavraki LE, Vardi MY.  2010.  Motion Planning with Dynamics by a Synergistic Combination of Layers of Planning. IEEE Transactions on Robotics. 26:469-482.
Abstract      Preprint PDF     Publisher's web site     
Bryant, DH, Moll M, Chen BY, Fofanov VY, Kavraki LE.  2010.  Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinformatics. 11:242.
Abstract      Preprint PDF     Publisher's web site     
Sucan, IA, Kalakrishnan M, Chitta S.  2010.  Combining Planning Techniques for Manipulation Using Realtime Perception. IEEE International Conference on Robotics and Automation. :2895-2901.
Preprint PDF     Publisher's web site     
Dhanik, A.  2010.  Computational Modeling of Structural Heterogeneity in Folded Proteins. PhD Thesis
Heath, AP, Bennett GN, Kavraki LE.  2010.  Finding Metabolic Pathways Using Atom Tracking. Bioinformatics. 26:1548-1555.
Abstract           Publisher's web site     
Bhatia, A, Kavraki LE, Vardi MY.  2010.  Motion Planning with Hybrid Dynamics and Temporal Goals. IEEE Conference on Decision and Control. :1108-1115.
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Sucan, IA, Kavraki LE.  2010.  On the Implementation of Single-Query Sampling-Based Motion Planners. IEEE International Conference on Robotics and Automation. :2005-2011.
Preprint PDF     Publisher's web site     
Moll, M, Bordeaux J, Kavraki LE.  2010.  Teaching Robot Motion Planning. Computers in Education (Special Issue on Novel Approaches to Robotics Education). 20:50–59.
Abstract      Preprint PDF
Ciocarlie, M, Hsiao K, Jones GE, Chitta S, Rusu RB, Sucan IA.  2010.  Towards Reliable Grasping and Manipulation in Household Environments. International Symposium on Experimental Robotics.
Haspel, N, Moll M, Baker ML, Chiu W, Kavraki LE.  2010.  Tracing conformational changes in proteins. BMC Structural Biology. 10:S1.
Abstract      Preprint PDF     Publisher's web site     
Schenk, AD, Casta D, Gipson B, Arheit M, Zeng X, Stahlberg H.  2010.  3D Reconstruction from 2D Crystal Image and Diffraction Data. Cryo-EM, Part B: 3-D Reconstruction. 482:101-129.
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2009
Sucan, IA, Kavraki LE.  2009.  On the Performance of Random Linear Projections for Sampling-Based Motion Planning. IEEE/RSJ International Conference on Intelligent Robots and Systems. :2434-2439.
Preprint PDF     Publisher's web site     
Rusu, RB, Sucan IA, Gerkey BP, Chitta S, Beetz M, Kavraki LE.  2009.  Real-Time Perception-Guided Motion Planning for a Personal Robot. IEEE/RSJ International Conference on Intelligent Robots and Systems. :4245-4252.
Preprint PDF     Publisher's web site     
Heath, AP, Kavraki LE.  2009.  Computational Challenges in Systems Biology. Computer Science Review. 3:1-17.
Abstract      Preprint PDF     Publisher's web site     
Plaku, E, Kavraki LE, Vardi MY.  2009.  Falsification of LTL Safety Properties in Hybrid Systems. Proc. of the Conf. on Tools and Algorithms for the Construction and Analysis of Systems (TACAS 2009).
Abstract      Preprint PDF
Buban, JP, Ramasse Q, Gipson B, Browning ND, Stahlberg H.  2009.  High-resolution low-dose scanning transmission electron microscopy. Journal of Electron Microscopy. 10:1–10.
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Plaku, E, Kavraki LE, Vardi MY.  2009.  Hybrid systems: from verification to falsification by combining motion planning and discrete search. Formal Methods in System Design. 34:157-182.
Abstract      Preprint PDF     Publisher's web site     
Sucan, IA, Kavraki LE.  2009.  Kinodynamic Motion Planning by Interior-Exterior Cell Exploration. Algorithmic Foundation of Robotics VIII (Proceedings of Workshop on the Algorithmic Foundations of Robotics). 57:449-464.
Abstract      Preprint PDF     Publisher's web site     
[Anonymous].  2009.  Modeling Discrete Heterogeneity in X-Ray Diffraction Data by Fitting Multi-conformers. Acta Crystallographica. D65:1107-1117.
van den Bedem, H, Dhanik A, Latombe JC, Deacon AM.  2009.  Modeling Discrete Heterogeneity in X-Ray Diffraction Data by Fitting Multi-conformers. Acta Crystallographica D. 65:1107-1117.
Haspel, N, Geisbrecht B, Lambris JD, Kavraki LE.  2009.  Multi-scale Characterization of the Energy Landscape of Proteins with Application to the C3d/Efb-C Complex. Proteins: Structure, function and bioinformatics. 78:1004-1014.
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Shehu, A, Kavraki LE, Clementi C.  2009.  Multiscale characterization of protein conformational ensembles. Proteins. 76:837-851.
Abstract           Publisher's web site     
Bekris, KE, Tsianos K, Kavraki LE.  2009.  Safe and Distributed Kinodynamic Replanning for Vehicular networks. ACM/Springer Mobile Networks and Applications (MONET). 14:292–308.
Abstract      Preprint PDF     Publisher's web site     
Haspel, N, Moll M, Baker ML, Chiu W, Kavraki LE.  2009.  Tracing Conformational Changes in Proteins. IEEE Intl. Conf. on Bioinformatics and Biomedicine Workshops (BIBMW).
Abstract      Preprint PDF     Publisher's web site     
2008
Plaku, E, Kavraki LE, Vardi MY.  2008.  Impact of Workspace Decompositions on Discrete Search Leading Continuous Exploration (DSLX) Motion Planning. IEEE International Conference on Robotics and Automation. :3751-3756.
Abstract     
Plaku, E, Kavraki LE, Vardi MY.  2008.  Discrete Search Leading Continuous Exploration for Kinodynamic Motion Planning. Robotics: Science and Systems. :326-333.
Abstract      Preprint PDF     Publisher's web site     
Masiel, D, Gipson B, Morgan DG, Spence JCH, Browning ND.  2008.  Particle Swarm Optimization of Iterative Phase Retrieval Algorithms for Ultrafast Coherent Diffractive Imaging. Microscopy and Microanalysis. 14(S2)
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Ricklin, D, Ricklin-Lichtsteiner SK, Sfyroera G, Chen H, Tzekou A, Magotti P, Wu Y-Q, Garcia BL, McWorther WJ, Haspel N et al..  2008.  Novel insights into target specificities and molecular mechanisms for two potent complement evasion proteins from Staphylococcus aureus.. XXII International Complement Workshop.
Abstract           Publisher's web site